Table 4 The VirStrain identification result of 32 real sequencing datasets
From: VirStrain: a strain identification tool for RNA viruses
BioSample | Sequencing | Blast | VirStrain | Data | Running | Region | Region | Genome |
|---|---|---|---|---|---|---|---|---|
accession number | platform | result | result | size | time | of sample | of clusters | in the DB |
SAMN13922059 | Illumina MiniSeq | MT470175.1 | MT470175.1 | 19.5 GB | 215s | Wuhan, China | Hangzhou, China |
|
SAMN14652901 | Illumina MiSeq | MT582484.1 | MT582484.1 | 1.08 GB | 34s | Heinsberg, Germany | Dusseldorf, Germany |
|
SAMN15062833 | NextSeq 550 | MT327745.1 | MT327745.1 | 3.4 GB | 39s | Turkey | Turkey |
|
SAMN17816674 | Illumina MiSeq | MT680219.1 (>1 hit) | MT680219.1 | 94 MB | 24s | New Mexico, USA | Virginia, USA |
|
SAMN15941290 | Ion Torrent S5 | MT576531.1 | MT576531.1 | 625 MB | 19s | Gujarat, INDIA | Gujarat, INDIA |
|
SAMEA7098097 | Illumina MiSeq | MT520283.1 | MT520283.1 | 1.2 GB | 20s | Stockholm, Sweden | Massachusetts, USA |
|
SAMN15916668 | NextSeq 500 | MT745701.1 | MT745701.1 | 309 MB | 14s | Victoria, Australia | Victoria, Australia |
|
SAMN14560168 | Illumina iSeq 100 | MT470175.1 | MT470175.1 | 2.8 GB | 47s | Cambodia | Hangzhou, China |
|
SAMN14643484 | Illumina MiSeq | MT159710.2 | MT159710.2 | 1.1 GB | 31s | Israel | DP cruise ship |
|
SAMN17799471 | Illumina MiSeq | MT506654.1 | MT506654.1 | 72 MB | 29s | Ohio, USA | Michigan, USA |
|
SAMN14652902 | Illumina MiSeq | MT582484.1 | MT582484.1 | 1.71 GB | 44s | Heinsberg, Germany | Dusseldorf, Germany | N |
SAMN14652906 | Illumina MiSeq | MT582496.1 | MT582496.1 | 1.16 GB | 34s | Heinsberg, Germany | Heinsberg, Germany | N |
SAMN17516427 | Illumina NovaSeq 6000 | MT558692.1 (>1 hit) | MT558692.1 | 618 MB | 31s | Rhode Island, USA | Virginia, USA |
|
SAMN17516424 | Illumina NovaSeq 6000 | MT558692.1 | MT558692.1 | 768 MB | 31s | Rhode Island, USA | Virginia, USA | N |
SAMN17516418 | Illumina NovaSeq 6000 | MT558692.1 (>1 hit) | MT558692.1 | 668 MB | 28s | Rhode Island, USA | Virginia, USA |
|
SAMN17816685 | Illumina MiSeq | multiple_hits (>2 hits) | MT585085.1 | 774 MB | 32s | New Mexico, USA | USA |
|
SAMN17911680 | Illumina MiniSeq | multiple_hits (>2 hits) | MT576531.1 | 110 MB | 20s | Chattogram, Bangladesh | Ahmedabad, INDIA |
|
SAMN17855793 | Illumina MiSeq | MT374114.1 (TaiWan) | MT371002.1 | 108 MB | 20s | California, USA | New York, USA | N |
SAMN17816704 | Illumina MiSeq | MT293195.1 | MT680219.1 (blast_rank =2) | 114 MB | 33s | New Mexico, USA | Virginia, USA |
|
SAMN17814567 | NextSeq 550 | MT344948.1 (v_rank =3) | MT750348.1 | 1.21 GB | 36s | USA | California, USA |
|
SAMN17855792 | Illumina MiSeq | MT259281.1 | MT370994.1 | 108 MB | 20s | California, USA | New York, USA | N |
SAMN17486870 | Illumina MiSeq | MT263459.1 | MT460132.1 | 91 MB | 21s | USA | California, USA | N |
SAMN17486876 | Illumina MiSeq | MT263406.1 | MT536186.1 | 64 MB | 29s | USA | New Orleans, USA | N |
SAMN17486898 | Illumina MiSeq | MT192765.1 | MT750383.1 | 85 MB | 25s | USA | California, USA | N |
