Skip to main content
Fig. 2 | Genome Biology

Fig. 2

From: Genome-wide analysis and functional annotation of chromatin-enriched noncoding RNAs in rice during somatic cell regeneration

Fig. 2

Tissue specificity and conservation of cheRNAs. A Upset plot showing the intersections of cheRNAs from mature embryos (n = 1245), undifferentiated callus (n = 844), differentiated callus (n = 828), and shoots (n = 876); the bar plot shows the intersection size of each ncRNA category. B Violin plot of the distribution of phastCons conservation scores for coding exons and introns of mRNAs (annotated using MSU7.0), che-lincRNAs, and lncRNAs (annotated using NONCODEv6). Mean phastCons scores were derived from 11 way rice whole-genome alignments and multispecies plant samples whole-genome alignments. p values were calculated by Wilcoxon Mann-Whitney test, p < 0.001 (***). C Sankey diagram of expressed snoRNAs data including snoRNA families, genomic organization of the clusters, annotations, and chromatin enrichment. D PhastCons conservation score distributions for all snoRNAs, che-snoRNAs, and the remaining unenriched snoRNAs. Mean phastCons scores were derived from 11 way rice whole-genome alignments and 8 way plant whole-genome alignments. p values were calculated by Wilcoxon Mann-Whitney test, p < 0.001 (***)

Back to article page