Table 1 Candidate genes identified by combined analysis of GWAS and qGWAS
Chr | Gene id | Gene_length (bp) | qGWAS | GWAS | Symbol | Description | ||
|---|---|---|---|---|---|---|---|---|
FDR | R | SNP localization | p value | Â | ||||
Oil content | Â | |||||||
6 | HS6_219G33 | 6313 | 5.25E-06 | 0.29 | 21962595 | 1.35E-05 | SDP1 | Triacylglycerol lipase SDP1 |
7 | HS7_514G48 | 5054 | 3.34E-14 | − 0.613 | 51390013 | 3.14E-05 | IAA26 | Auxin-responsive protein |
8 | MSTRG.99856 | 4621 | 6.38E-05 | − 0.3502 | 39600463 | 9.43E-04 | FabD | Malonyl-CoA:ACP transacylase |
10 | HS10_561G6 | 914 | 1.02E-02 | − 0.42 | 29454430 | 5.47E-04 | ERF5 | Ethylene response factor 11 |
15 | HS15_46G25 | 935 | 7.05E-06 | − 0.389 | 4624317 | 1.92E-05 | GDSL | GDSL esterase/lipase At4g10955 |
10 | HS10_219G24 | 4254 | 2.90E-05 | − 0.358 | 21981975 | 3.79E-04 | LPCAT | Acyl-CoA N-acyltransferases superfamily protein isoform 1 |
13 | MSTRG.41142 | 7418 | 1.13E-04 | − 0.357 | 179016485 | 6.73E-04 | FAD2 | Fatty acid desaturase |
2 | HS2_300G57 | 3614 | 1.87E-05 | − 0.322 | 30098439 | 6.92E-06 | IAA14 | Auxin-responsive protein IAA14 |
11 | HS11_422G6 | 953 | 7.68E-03 | − 0.236 | 42215447 | 3.25E-05 | ERF4 | Ethylene-responsive transcription factor |
5 | MSTRG.81837 | 4601 | 1.19E-02 | − 0.209 | 116227945 | 7.80E-04 | lip1 | Monoacylglycerol lipase |
12 | MSTRG.26275 | 17055 | 4.28E-02 | − 0.136 | 9644861 | 8.96E-04 | LTPG1 | Non-specific lipid transfer Protein GPI-anchored 1 |
3 | HS3_761G26 | 2574 | 3.89E-02 | 0.175 | 76145034 | 9.81E-06 | ARF17 | Auxin response factor 17-like |
8 | MSTRG.103039 | 5768 | 6.92E-03 | 0.2272 | 120840884 | 3.03E-04 | KASII | Ketoacyl-ACP synthase II |
10 | HS10_558G29 | 422 | 4.95E-06 | 0.277 | 55897886 | 5.25E-04 | Oleosin3 | OleosinIII |
Palmitic acid | Â | |||||||
3 | MSTRG.69298 | 11088 | 1.88E-02 | 0.205 | 185416919 | 7.11E-04 | SAC8 | Phosphoinositide phosphatase SAC8 |
15 | HS15_173G3_1 | 7778 | 1.80E-02 | 0.199 | 17317574 | 6.99E-05 | KASIII | Ketoacyl-ACP synthase III |
Stearic acid | Â | |||||||
6 | MSTRG.86106 | 4700 | 3.02E-02 | 0.192 | 54469978 | 1.10E-04 | GDL57 | GDSL esterase/lipase |
7 | HS7_713G15_1 | 4379 | 1.38E-02 | − 0.251 | 71298145 | 3.36E-04 | GLPK | Glycerol kinase |
10 | HS10_11G26_1 | 3727 | 4.54E-02 | − 0.241 | 1067616 | 1.02E-04 | SAD1 | Stearoyl-ACP desaturase |
8 | HS8_425G5_1 | 5137 | 1.49E-02 | 0.221 | 42575259 | 1.86E-04 | PLC1 | Phospholipase C |
11 | HS11_436G24_1 | 17347 | 2.48E-02 | − 0.213 | 43619536 | 5.37E-04 | PLC6 | Phosphoinositide phospholipase C 6-like |