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Fig. 6 | Genome Biology

Fig. 6

From: DENA: training an authentic neural network model using Nanopore sequencing data of Arabidopsis transcripts for detection and quantification of N6-methyladenosine on RNA

Fig. 6

Profiling m6A modification in Col-0, fip37-4, and mtb A. thaliana lines. a Venn diagram shows the common m6A sites among Col-0, fip37-4, and mtb samples generated in this study. b The m6A distribution on transcripts in Col-0, fip37-4, and mtb, respectively. c Jointplot shows the correlation of m6A rate at 11,419 overlapped sites between Col-0 and fip37-4. d Circos shows the profile, sequencing depth, and modification rate of m6A sites in wild-type and m6A-deficient mutant with single-nucleotide resolution, respectively. e The top is the m6A peaks identified in CCA1 using MeRIP-seq in previous study, and the below is the average m6A rate of two high-confidence m6A sites identified by DENA from CCA1 gene in wild-type and m6A-deficient mutant of A. thaliana, respectively. f Point maps the top 25 terms of Gene Ontology enrichment result with all m6A-modified genes. g The changes of average m6A rate at the five high-confidence m6A sites from GIGANTEA gene in wild-type and m6A-deficient mutant of A. thaliana, respectively

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Genome Biology

ISSN: 1474-760X

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