From: Strainline: full-length de novo viral haplotype reconstruction from noisy long reads
 | #Contigs | HC (%) | N50 (bp) | NGA50 (bp) | ER (%) | MC(%) |
---|---|---|---|---|---|---|
5-strain PVY mixture | ||||||
Strainline | 7 | 97.9 | 9538 | 9548 | 0.956 | 0.0 |
Canu | 3 | 39.9 | 9665 | 5456* | 0.105 | 0.0 |
Wtdbg2 | 2 | 26.0 | 7632 | - | 4.931 | 0.0 |
SARS-CoV-2 (SRP250446) | ||||||
Strainline | 1 | 99.9 | 29,565 | 29,565 | 0.832 | 0.0 |
Canu | - | - | - | - | - | - |
Wtdbg2 | 1 | 65.8 | 19,405 | 19,396 | 1.542 | 0.0 |
CliqueSNV †| 1 | 99.9 | 29,565 | 29,565 | 0.859 | 0.0 |