Fig. 3
From: CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data
Phylogenetic accuracy in simulation 4 (“NGS-like”) at 5x. Datasets consisted of 40 cells and 1000–2000 SNVs. TNT, SiFit, and CellPhy-ML16 use the inferred genotypes, CellPhy-GL16 uses genotype likelihoods, and SCIPhI and ScisTree use read counts. Phylogenetic accuracy is 1—nRF (see the “Methods” section). AMP is the amplification error rate, SEQ is the sequencing error rate, and ADO is the allelic dropout rate. See Fig. 1 for an explanation of the boxplots