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Table 4 S. dysgalactiae assembly statistics for enriched and control channels

From: Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples

Enrich S. dysgalactiae (channels 1–256)

Time (hours)

1

1.5

2

3

4

5

6

Reads

2066

3669

3810

5648

7385

8984

10,467

Total read length

22,620,532

41,656,686

41,901,525

60,708,472

78,890,074

94,518,641

108,992,425

Contigs

2

1

1

1

1

1

1

Total contig length

2,117,919

2,079,393

2,079,362

2,079,466

2,079,521

2,079,533

2,079,512

Contig N50

2,111,978

2,079,393

2,079,362

2,079,466

2,079,521

2,079,533

2,079,512

Longest contig

2,111,978

2,079,393

2,079,362

2,079,466

2,079,521

2,079,533

2,079,512

Aligned bases in ref

99.98%

100.00%

100.00%

100.00%

100.00%

100.00%

100.00%

Assembly time

00:05:31

00:09:00

00:08:47

00:11:39

00:14:43

00:17:19

00:19:20

Control (channels 257–512)

Time (hours)

1

Not performed

2

3

4

5

6

Reads

466

 

902

1406

1797

2216

2609

Total read length

6,021,205

 

11,113,179

17,840,666

22,769,997

28,302,443

32,833,051

Contigs

3

 

8

7

5

5

6

Total contig length

600,309

 

1,705,413

2,242,365

2,610,844

2,703,245

2,772,594

Contig N50

442,714

 

315,659

1,691,837

2,100,413

2,077,669

2,079,314

Longest contig

442,714

 

616,463

1,691,837

2,100,413

2,077,669

2,079,314

Aligned bases in ref

32.05%

 

80.47%

98.06%

99.73%

99.88%

100.00%

Assembly time

00:02:13

 

00:03:23

00:04:34

00:05:47

00:06:32

00:07:07