From: Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Enrich S. dysgalactiae (channels 1–256) | |||||||
Time (hours) | 1 | 1.5 | 2 | 3 | 4 | 5 | 6 |
Reads | 2066 | 3669 | 3810 | 5648 | 7385 | 8984 | 10,467 |
Total read length | 22,620,532 | 41,656,686 | 41,901,525 | 60,708,472 | 78,890,074 | 94,518,641 | 108,992,425 |
Contigs | 2 | 1 | 1 | 1 | 1 | 1 | 1 |
Total contig length | 2,117,919 | 2,079,393 | 2,079,362 | 2,079,466 | 2,079,521 | 2,079,533 | 2,079,512 |
Contig N50 | 2,111,978 | 2,079,393 | 2,079,362 | 2,079,466 | 2,079,521 | 2,079,533 | 2,079,512 |
Longest contig | 2,111,978 | 2,079,393 | 2,079,362 | 2,079,466 | 2,079,521 | 2,079,533 | 2,079,512 |
Aligned bases in ref | 99.98% | 100.00% | 100.00% | 100.00% | 100.00% | 100.00% | 100.00% |
Assembly time | 00:05:31 | 00:09:00 | 00:08:47 | 00:11:39 | 00:14:43 | 00:17:19 | 00:19:20 |
Control (channels 257–512) | |||||||
Time (hours) | 1 | Not performed | 2 | 3 | 4 | 5 | 6 |
Reads | 466 | Â | 902 | 1406 | 1797 | 2216 | 2609 |
Total read length | 6,021,205 | Â | 11,113,179 | 17,840,666 | 22,769,997 | 28,302,443 | 32,833,051 |
Contigs | 3 | Â | 8 | 7 | 5 | 5 | 6 |
Total contig length | 600,309 | Â | 1,705,413 | 2,242,365 | 2,610,844 | 2,703,245 | 2,772,594 |
Contig N50 | 442,714 | Â | 315,659 | 1,691,837 | 2,100,413 | 2,077,669 | 2,079,314 |
Longest contig | 442,714 | Â | 616,463 | 1,691,837 | 2,100,413 | 2,077,669 | 2,079,314 |
Aligned bases in ref | 32.05% | Â | 80.47% | 98.06% | 99.73% | 99.88% | 100.00% |
Assembly time | 00:02:13 | Â | 00:03:23 | 00:04:34 | 00:05:47 | 00:06:32 | 00:07:07 |