Table 1 Relative abundance of the 7 bacteria used in the mock community, as determined from control runs. All were selected from the National Collection of Type Cultures and strain IDs are given. Percentages represent the percentage of sequenced bp aligned to reference genomes. Read counts give similar percentages and can be found in the spreadsheet Additional file 1
From: Nanopore adaptive sampling: a tool for enrichment of low abundance species in metagenomic samples
Species | NCTC ID | 1.7kbp (%) | 4.7kbp (%) | 12.8kbp (%) | 10.6kbp high to low (%) | 10.6kbp low to high (%) |
|---|---|---|---|---|---|---|
Achromobacter xylosoxidans | 10807 | 36.98 | 36.72 | 42.67 | 30.13 | 28.99 |
Morganella morganii | 235 | 37.29 | 34.68 | 32.05 | 38.30 | 37.68 |
Leminorella richardii | 12151 | 12.07 | 11.89 | 11.25 | 7.50 | 7.19 |
Moellerella wisconsensis | 12132 | 4.36 | 5.82 | 4.39 | 11.49 | 11.04 |
Pseudomonas aeruginosa | 10332 | 5.23 | 5.32 | 5.91 | 4.39 | 4.79 |
Proteus vulgaris | 13145 | 2.69 | 4.03 | 2.51 | 5.92 | 6.22 |
Streptococcus dysgalactiae | 5370 | 1.34 | 1.55 | 1.19 | 2.20 | 2.58 |
Unmapped | Â | 0.03 | 0.01 | 0.04 | 0.07 | 1.50 |