Table 3 Metagenome-assembled viruses in the ALOHA_VIROME dataset identified in various assemblies
From: viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
Sample | metaFlye + | viralFlye | Raven + | Viruses assembled in [27] | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
viralTools | viralTools | |||||||||
Linear | Circular | Components | Linear | Circular | Components | Linear | Circular | Components | ||
ALOHA_VIROME1 | 368 | 306 | 75 | 1363 | 315 | 239 | 109 | 40 | 33 | 1205 (1114 unique) |
ALOHA_VIROME2 | 259 | 125 | 32 | 876 | 96 | 127 | 17 | 10 | 10 | 566 (540 unique) |
ALOHA_VIROME3 | 408 | 316 | 69 | 1577 | 280 | 196 | 91 | 44 | 17 | 93 (92 unique) |
Total | 1035 | 747 | 176 | 3816 | 691 | 562 | 217 | 94 | 60 | 1864 |
Contigs with “high” or “medium” completeness by checkV | 964 | 719 | 148 | 3551 | 663 | 525 | 217 | 94 | 58 | 1837 |