viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data

Table 2 Metagenome-assembled viruses in the WARWICK_VIROME dataset identified in various assemblies

Sample	metaFlye +			viralFlye			Raven +
	viralTools						viralTools
	Linear	Circular	Components	Linear	Circular	Components	Linear	Circular	Components
WARWICK_VIROME1	15	23	111	16	26	137	0	0	0
WARWICK_VIROME2	60	20	124	37	32	169	0	0	0
WARWICK_VIROME3	38	22	108	34	27	150	0	0	0
Total	113	65	343	87	85	456	0	0	0
Contigs with “high” or ‘mMedium” completeness by checkV	89	58	238	58	76	282	0	0	0

Since the average read length in this dataset is low (≈ 2 kb), the coverage estimates for the Raven-assembled contigs are too low to pass the coverage cutoff 10x

ISSN: 1474-760X