Table 1 Metagenome-assembled viruses in the HUMAN_GUT dataset
From: viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data
Sample | metaFlye + | viralFlye | Raven + | Viruses assembled in [15] | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
viralTools | viralTools | |||||||||
Linear | Circular | Components | Linear | Circular | Components | Linear | Circular | Components | ||
apr34 | 0 | 7 | 0 | 2 | 6 | 0 | 4 | 3 | 0 | 4 |
apr38 | 0 | 1 | 0 | 0 | 2 | 0 | 2 | 0 | 0 | 0 |
MO1-2 | - | - | - | 1 | 0 | 0 | 2 | 0 | 1 | 0 |
GM1-2 | - | - | - | 5 | 0 | 1 | 1 | 0 | 0 | 0 |
FAKO27 | - | - | - | 11 | 2 | 0 | 5 | 2 | 0 | 2 |
YS1-2 | 0 | 3 | 0 | 1 | 3 | 0 | 3 | 1 | 0 | 2 |
ES_all | - | - | - | 7 | 0 | 1 | 6 | 1 | 0 | 1 |
FAK02 | 0 | 1 | 0 | 2 | 3 | 0 | 1 | 1 | 0 | 0 |
FAK03 | - | - | - | 1 | 0 | 0 | 0 | 0 | 0 | 0 |
FAK05 | - | - | - | 3 | 0 | 1 | 1 | 0 | 0 | 1 |
GF1-2 | - | - | - | 5 | 0 | 3 | 4 | 1 | 0 | 1 |
FA1-2 | - | - | - | 6 | 2 | 1 | 2 | 1 | 0 | 1 |
Total | 0 | 12 | 0 | 44 | 18 | 7 | 31 | 10 | 1 | 12 |
Contigs with “high” or “medium” completeness by checkV | 0 | 12 | 0 | 35 | 18 | 6 | 29 | 10 | 1 | 12 |