Fig. 2

Analysis strategy and comparisons of mapper, center, and replicate SVs. A Analysis strategy for examining variability attributed to different factors including centers, replicates, mappers, and dedup/recal. To examine variability from each factor independently, SVs had to be concordant between the call sets of the other factors to pass for downstream analysis (e.g., to examine variable SVs attributed to mappers, SVs must be filtered to only include SV calls present in all replicates, centers, and dedup/recal). B Comparison of variability due to different SV mapping methods in LCL5. C Comparison of variability due to different centers in LCL5. D Comparison of variability across different replicates in LCL5