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Table 3 F1 score, the number of false positives (FP) and the number of false negatives (FN) obtained on TCGA-BRCA dataset in three scenarios. Values corresponding to the best performance over all methods are italicized. All calculated performance measures are reported in Additional file 2: Table S2

From: Flimma: a federated and privacy-aware tool for differential gene expression analysis

 

F1

FP

FN

Scenario

Balanced

Mildly imbalanced

Strongly imbalanced

Balanced

Mildly imbalanced

Strongly imbalanced

Balanced

Mildly imbalanced

Strongly imbalanced

Flimma

1.00

1.00

1.00

0

0

0

0

0

0

Fisher

1.00

0.92

0.93

14

248

192

8

290

265

Stouffer

1.00

0.92

0.93

14

245

189

9

290

265

REM

1.00

0.97

0.95

12

80

121

17

119

215

RankProd

1.00

0.92

0.93

14

243

193

12

295

274