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Table 3 F1 score, the number of false positives (FP) and the number of false negatives (FN) obtained on TCGA-BRCA dataset in three scenarios. Values corresponding to the best performance over all methods are italicized. All calculated performance measures are reported in Additional file 2: Table S2

From: Flimma: a federated and privacy-aware tool for differential gene expression analysis

  F1 FP FN
Scenario Balanced Mildly imbalanced Strongly imbalanced Balanced Mildly imbalanced Strongly imbalanced Balanced Mildly imbalanced Strongly imbalanced
Flimma 1.00 1.00 1.00 0 0 0 0 0 0
Fisher 1.00 0.92 0.93 14 248 192 8 290 265
Stouffer 1.00 0.92 0.93 14 245 189 9 290 265
REM 1.00 0.97 0.95 12 80 121 17 119 215
RankProd 1.00 0.92 0.93 14 243 193 12 295 274