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Fig. 2 | Genome Biology

Fig. 2

From: DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data

Fig. 2

DropletQC identifies empty droplets and damaged cells in four heterogeneous scRNA-seq datasets. Total UMI counts (y-axis) and nuclear fraction scores (x-axis) are shown for each cell, with colors representing the status of each cell assigned by DropletQC. Empty droplets contain less RNA than cells and a higher fraction of cytoplasmic RNA (low nuclear fraction score). Damaged cells contain less RNA than intact cells and a higher proportion of unspliced RNA fragments (high nuclear fraction score)

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