Table 1 Datasets used in this study
Database | Dataset | Organ | Accession | Platform |
|---|---|---|---|---|
ENCODE | H3K4me1 ChIP-seq of mouse embryo E14.5 | Heart | ENCSR000CDL | H3K4me1 histone ChIP-sequencing |
H3K4me3 ChIP-seq of mouse embryo E14.5 | Heart | ENCSR357OED | H3K4me3 histone ChIP-sequencing | |
H3K27ac ChIP-seq of mouse embryo E14.5 | Heart | ENCSR000CDK | H3K27ac histone ChIP-sequencing | |
H3K4me1 ChIP-seq of mouse embryo E14.5 | Limb | ENCSR529ERN | H3K4me1 istone ChIP-sequencing | |
H3K4me3 ChIP-seq of mouse embryo E14.5 | Limb | ENCSR176BXC | H3K4me3 histone ChIP-sequencing | |
H3K27ac ChIP-seq of mouse embryo E14.5 | Limb | ENCSR021ALF | H3K27ac histone ChIP-sequencing | |
H3K4me1 ChIP-seq of mouse embryo E14.5 | Liver | ENCSR234ISO | H3K4me1 histone ChIP-sequencing | |
H3K4me3 ChIP-seq of mouse embryo E14.5 | Liver | ENCSR433ESG | H3K4me3 histone ChIP-sequencing | |
H3K27ac ChIP-seq of mouse embryo E14.5 | Liver | ENCSR075SNV | H3K27ac histone ChIP-sequencing | |
H3K4me1 ChIP-seq of mouse embryo E14.5 | Forebrain | ENCSR556ZUY | H3K4me1 istone ChIP-sequencing | |
H3K4me3 ChIP-seq of mouse embryo E14.5 | Forebrain | ENCSR172XOZ | H3K4me3 histone ChIP-sequencing | |
H3K27ac ChIP-seq of mouse embryo E14.5 | Forebrain | ENCSR320EEW | H3K27ac histone ChIP-sequencing | |
Mouse embryo E14.5 | Heart | GSE78441 | RNA-sequencing (mapped on mm9) | |
Mouse embryo E14.5 | Heart | GSM929724 | RNA-sequencing | |
Mouse embryo E14.5 | Limb | GSM929713 | RNA-sequencing | |
Mouse embryo E14.5 | Liver | GSM929721 | RNA-sequencing | |
Mouse embryo E14.5 | Brain | GSM929723 | RNA-sequencing | |
STRING 10 | protein.link.detailed.v10.txt | N/A | PMID:25352553 | Protein-protein interaction network, text mining |
METASCAPE | Â | N/A | PMID:30944313 | Mus Musculus, Gene Ontology, Biological Process |
GREAT 3.0.0 | UCSC Known Genes, GREAT gene ontology | N/A | PMID:20436461 | Functional annotation, gene ontology |
OMIM | genemap2.txt | N/A | PMID:25428349 | Functional annotation, gene ontology |
PANTHER 10.0 | PANTHER10.0 Library | N/A | PMID:23868073 | Functional annotation, gene ontology |
MGI | Gene Expression Database (GXD) | Heart | PMID:17474068 | In situ spatial gene expression pattern annotations |
MGI | Mouse Genome Database (MGD) | N/A | PMID:17474068 | Gene mutation, phenotype annotation |
MGI/Eurexpress atlas | Atp2a2 Specimen euxassay_007726_15: embryonic day 14.5 Cbx5 Specimen MH213; Specimen C1015: embryonic day 14.5 Ppp1r3c Specimen euxassay_000666_12: embryonic day 14.5 | Heart | MGI:4522611 MGI:5331042 MGI:4468106 PMID:17474068 PMID: 21267068 | In situ hybridization images |