%-of-samples threshold | % annotated | % exon skip | % one annotated | % neither annotated |
|---|
1 | 54.4 | 10.7 | 24.8 | 10.0 |
2 | 67.7 | 8.7 | 17.7 | 5.9 |
5 | 84.0 | 5.0 | 8.5 | 2.5 |
10 | 93.4 | 2.4 | 3.2 | 1.0 |
20 | 98.3 | 0.8 | 0.6 | 0.3 |
- First column specifies the filtering criterion: only junctions appearing in at least this percent of run accessions are included. Other columns specify the percentage of these junctions that appear entirely in some annotation (“% annotated”), where both the donor and acceptor appear in some annotation, but never together in the same junction (“% exon skip”), where either the donor or the acceptor do not appear in annotation (“% one annotated”), and where neither donor nor acceptor appear in annotation (“% neither annotated”). We used an inclusive set of gene annotations including all the annotated junctions in several Gencode versions up to V33, as well as CHESS 2.2. The full set of annotations is listed in Table 3
