Table 3 False discovery rate of assembly errors in HG002 assemblies
From: Accurate long-read de novo assembly evaluation with Inspector
Inspector | Merqury | QUAST-LG | ||||
|---|---|---|---|---|---|---|
Small-scale | Structural | |||||
CLR | Canu | 3.57 | –a | 14.36 | 35.23 | |
Flye | 5.77 | 0.00 | 21.93 | 51.65 | ||
wtdbg2 | 0.94 | 0.00 | 15.33 | 38.37 | ||
HiFi | Canu | 6.21 | –a | 3.61 | 38.96 | |
Flye | 0.41 | 0.00 | 56.13 | 52.64 | ||
wtdbg2 | 0.90 | 2.38 | 72.64 | 64.23 | ||
hifiasm | 8.85 | 0.00 | 9.99 | 51.63 | ||
Nanopore | Canu | 1.01 | 0.00 | 3.89 | 23.16 | |
Flye | 1.28 | 7.69 | 5.22 | 52.39 | ||
wtdbg2 | 0.72 | 0.00 | 6.37 | 12.32 | ||
Shasta | 1.96 | 0.32 | 5.15 | 46.68 | ||
Mean | 2.88 | 1.15 | 19.51 | 42.48 | ||