From: Accurate long-read de novo assembly evaluation with Inspector
Assembly | Â | Contig continuity | Â | Assembly error | Â | QUAST-LG | Â | Merqury | Â | Reference-based mode | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | # Contig | Total | Max | N50 |  | Structural | Small-scale | QV |  | Misassembly | MM |  | QV |  | NA50 | MR (%) | Coverage (%) | ||
CLR | |||||||||||||||||||
 | Canu |  | 4751 | 2.91 | 72.0 | 7.2 |  | 103 | 39.82 | 43.63 |  | 8341 | 18.84 |  | 38.51 |  | 1.32 | 99.15 | 89.41 |
 | Flye |  | 2168 | 2.82 | 66.6 | 12.0 |  | 192 | 30.88 | 43.38 |  | 4005 | 16.46 |  | 38.71 |  | 1.47 | 99.36 | 88.67 |
 | Wtdbg2 |  | 2947 | 2.77 | 48.5 | 7.0 |  | 158 | 430.00 | 33.46 |  | 8943 | 29.13 |  | 29.42 |  | 0.43 | 97.77 | 86.17 |
HiFi | |||||||||||||||||||
 | Canu |  | 1376 | 3.37 | 192.2 | 65.3 |  | 5 | 1.90 | 54.85 |  | 47672 | 29.17 |  | 46.57 |  | 2.20 | 95.95 | 91.71 |
 | Flye |  | 2379 | 2.96 | 136.6 | 35.1 |  | 256 | 20.74 | 43.69 |  | 14478 | 17.34 |  | 48.08 |  | 2.28 | 97.82 | 90.36 |
 | wtdbg2 |  | 1652 | 2.76 | 74.8 | 16.3 |  | 251 | 83.06 | 39.42 |  | 4124 | 14.65 |  | 42.66 |  | 1.56 | 99.38 | 86.77 |
 | hifiasm |  | 559 | 3.07 | 199.4 | 111.1 |  | 18 | 3.62 | 53.62 |  | 31143 | 21.47 |  | 45.88 |  | 2.53 | 97.37 | 92.03 |
Nanopore | |||||||||||||||||||
 | Canu |  | 745 | 2.90 | 101.3 | 33.1 |  | 1432 | 3845.99 | 24.05 |  | 14926 | 100.03 |  | 22.94 |  | 0.27 | 98.27 | 88.46 |
 | Flye |  | 584 | 2.87 | 109.9 | 51.7 |  | 481 | 316.46 | 34.30 |  | 7688 | 33.94 |  | 30.46 |  | 1.48 | 99.32 | 89.80 |
 | wtdbg2 |  | 7959 | 2.97 | 54.2 | 8.2 |  | 2226 | 2116.76 | 24.91 |  | 23159 | 65.88 |  | 24.49 |  | 0.30 | 93.79 | 84.91 |
 | Shasta |  | 1258 | 2.80 | 129.3 | 23.3 |  | 2527 | 2554.72 | 25.74 |  | 9063 | 70.15 |  | 24.76 |  | 0.31 | 99.16 | 87.71 |