Table 2 Compute times for three selected samples from the Leucegene KMT2A-PTD cohort, including the sample with the least variants called, the median, and the most. Reads were 100 bp and samples were run against 13 AML controls on a server with 32 cores and 190 GB of available memory
From: MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data
Sample | Variants | Read pairs | Time | Max mem (GB) |
|---|---|---|---|---|
08H012 | 128 (min) | 67,789,336 | 3Â h 24Â min | 101.47 |
07H155 | 214 (median) | 98,946,255 | 6Â h 42Â min | 89.85 |
10H007 | 2093 (max) | 113,017,564 | 7Â h 04Â min | 102.64 |