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Fig. 4 | Genome Biology

Fig. 4

From: MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data

Fig. 4

A Summary of true positive variants detected by MINTIE, Arriba, Squid and TAP in Leucegene AML samples. Red line shows the total variants present in the category (only results from one sample were available for TAP from the KMT2A cohort). *The remaining 3 bp FLT3-ITD could be detected by changing MINTIE’s minimum gap size parameter to 3. B The number of genes with variants found per sample across the 23 non-cancer cell types from Leucegene. Each bar represents a different sample within the cell type. Samples are ordered by the total number of genes with detected variants. C Mean number of genes with variants called in Leucegene granulocyte samples where different numbers of (granulocyte sample) controls were used. ‘Error’ bars show minimum and maximum variant genes called across replicate experiments, reflecting different combinations of controls. N = 4 has one combination of controls, N = 3 has two, N = 2 has three and N = 1 has four

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