Fig. 7
From: LightGBM: accelerated genomically designed crop breeding through ensemble learning
Enhancement in GWAS sensitivity by LightGBM prediction. a GWAS signals on DTT, PH, and EW were enhanced after adding the 1221 F1s with predicted phenotypes to the 7431 training samples with observed phenotypes. The blue, green, and red dashed lines represent the p values of 1e−5, 1e−6, and 2.2e−7, respectively. b GWAS signals on metabolic compounds of 5.47_216.1009 (left panel) and 3.32_594.1573n (right panel) were enhanced after adding the 509 lines with predicted phenotypes to the 266 training samples. The blue, green, and red dashed lines represent the p values of 1e−5, 1e−6, and 2.2e−7, respectively