Fig. 1
From: Genomic insight into balancing high yield, good quality, and blast resistance of japonica rice
Genome-wide association studies of genes related to yield traits. a The change of yield traits of the sequenced 200 japonica rice varieties. *** indicates a significant correlation at P < 0.001, ** indicates a significant correlation at P < 0.01. b Correlation and Gaussian distribution of yield, grain weight, grain number, and panicle traits; the diagonals represent the distribution of different yield traits. *** indicates a significant correlation (P < 0.001). c–e Manhattan plots of genome-wide association studies (GWASs) of grain weight, grain number, and panicle number using 200 japonica rice varieties; minor allele frequency (MAF) > 0.05. The threshold − log(P) value of the GWAS result was 8.3. The heatmaps in c–e show the density of SNP markers (− log(P) value > 4) in 100 kb chromosome intervals. YP, yield per plant (g); GW, 1000-grain weight (g); PN, panicle number; GN, grain number