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Table 2 Sixteen categories of CpG/SBE-SNPs. Reference allele is assumed to be the targeted allele in Illumina’s probe annotation, which does not necessarily correspond to the major allele

From: Revisiting genetic artifacts on DNA methylation microarrays exposes novel biological implications

  1. a If # internal CpGs 1 and locus is methylated, sometimes K = 2. Mismatch at position prior to 3′-end of the probe