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Table 1 Before and after “pooling”

From: Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction

 

Before (mean Acc)

After (Acc)

Before (mean ARI)

After (ARI)

Before (mean Macro F1)

After (Macro F1)

Mouse brain region effect

0.993

0.996

0.995

0.997

0.915

0.959

Mouse brain dataset effect (pFC)

0.971

0.988

0.947

0.967

0.892

0.904

Mouse brain dataset effect (cortex)

0.977

0.982

0.955

0.965

0.918

0.927

Mouse brain dataset effect (combine pFC and cortex)

–

0.986

–

0.963

–

0.933

Human PBMC lupus batch effect

0.872

0.893

0.779

0.789

0.717

0.790

Human PBMC lupus clinical difference

0.838

0.850

0.724

0.716

0.673

0.701

Human PBMC lupus (combine batch effect and clinical difference)

–

0.896

–

0.782

–

0.790

  1. Performance comparisons between before and after “pooling” individuals with condition effect. “–” indicates the data is unavailable. The bold data indicates a performance improvement
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Genome Biology

ISSN: 1474-760X

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