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Fig. 2 | Genome Biology

Fig. 2

From: Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction

Fig. 2

Prediction accuracy gains/losses with different reference sizes. A 0–1000 cells. B 1000–5000 cells. C 5000–10,000 cells. D 10,000+ cells. scmap ranks 1st in A and 2nd in B, but when cell number increases, scmap ranks 6th both in C and D. MLP ranks steadily as 1st or 2nd. SVM with RBF kernel first ranks 6th in A but later ranks 1st in D. The F-test on reference data ranks steadily as 1st among all feature selection methods

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Genome Biology

ISSN: 1474-760X

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