Fig. 5
From: Gramtools enables multiscale variation analysis with genome graphs
gramtools genotyping compared to reference-based callers at four surface antigens in 14 validation samples. The x-axis is the scaled edit distance (edit distance divided by the length of the gene) to the true sequence (as determined from high-quality PacBio assemblies). The y-axis gives sequence counts across all four genes (AMA1, EBA175, DBLMSP and DBLMSP2) and all 14 evaluated samples. The top left panel shows the distances between the 3D7 sequence and the truth assemblies, while the other panels show the distances for sequences inferred by the evaluated tools. The dotted lines and adjacent numbers show the mean scaled edit distance