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Fig. 9 | Genome Biology

Fig. 9

From: Pandora: nucleotide-resolution bacterial pan-genomics with reference graphs

Fig. 9

How often do references closely approximate a sample? Pandora aims to infer a reference for use in its VCF, which is as close as possible to all samples. We evaluate the success of this here. The x-axis shows the number of genomes in which a locus occurs. The y-axis shows the (log-scaled) count of loci in the 20 samples that are within 1% edit distance (scaled by locus length) of each reference—box plots for the reference genomes, and line plot for the VCF reference inferred by pandora

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