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Table 1 The different usage modes of BRIE2

From: BRIE2: computational identification of splicing phenotypes from single-cell transcriptomic experiments

 

Features

Purpose

Mode0

None

Pure quantification with posterior

Mode1

Gene features (genomic sequences, etc)

Imputation-enabled quantification

Mode2-quant

Unity cell features (i.e. intercept)

Quantification with aggregated prior

Mode2-diff

Cell features (condition, pseudo-time, etc)

Differential splicing detection