From: Functional genomics atlas of synovial fibroblasts defining rheumatoid arthritis heritability
Locus | Chr | TAD_diff | Type of difference | Enriched_in | Expressed in FLS | Differential expressed in FLS (p adj < 0.05) |
---|---|---|---|---|---|---|
9 | chr1 | Differential | Strength Change | Basal | RC3H1; RABGAP1L; PRDX6; KLHL20; GAS5-AS1; GAS5; ZBTB37 | GAS5; PRDX6; ZBTB37; RABGAP1L; RC3H1 |
10 | chr2 | Differential | Complex | Basal | LBH; LCLAT1; YPEL5 | LBH; LCLAT1 |
13 | chr2 | Differential | Merge | Stim | NPAS2 | NPAS2 |
19 | chr3 | Differential | Strength Change | Basal | CMC1; SLC4A7; AZI2 | CMC1 |
20 | chr3 | Differential | Split | Basal | SLMAP; FLNB; FLNB-AS1; PXK; PDHB | PXK; FLNB |
21 | chr3 | Differential | Strength Change | Basal | PCCB; PPP2R3A; MSL2; STAG1 | PCCB |
22 | chr4 | Differential | Strength Change | Basal | WDR1; ZNF518B | Â |
27 | chr6 | Differential | Strength Change | Basal | SRPK1; MAPK14; PI16; LHFPL5; BRPF3; KCTD20; STK38; SRSF3; PANDAR; CDKN1A; C6orf89; MTCH1 | SRPK1; C6orf89; STK38; MTCH1; KCTD20; BRPF3; CDKN1A; SRSF3 |
28 | chr6 | Differential | Strength Change | Stim | RSPH9; VEGFA; CDC5L; TMEM63B; HSP90AB1; SLC35B2 | TMEM63B; CDC5L |
29 | chr6 | Differential | Strength Change | Stim | IFNGR1; WAKMAR2; TNFAIP3 | TNFAIP3; IFNGR1 |
30 | chr6 | Differential | Strength Change | Stim | IFNGR1; WAKMAR2; TNFAIP3 | TNFAIP3; IFNGR1 |
32 | chr6 | Differential | Strength Change | Basal | RPS6KA2; AFDN | Â |
33 | chr7 | Differential | Strength Change | Stim | CREB5; TAX1BP1; JAZF1 | JAZF1; TAX1BP1 |
47 | chr11 | Differential | Strength Change | Basal | TRIM44; FJX1; COMMD9 | COMMD9 |
48 | chr11 | Differential | Strength Change | Basal | FADS2; SLC15A3; TKFC; INCENP; AHNAK; INTS5; CCDC86; PRPF19; TMEM109; TMEM132A; VPS37C; DDB1; CYB561A3; TMEM138; CPSF7; MYRF; FEN1; FADS1; FADS3; RAB3IL1; BEST1; FTH1; EEF1G; TUT1; MTA2; EML3; ROM1; GANAB; LBHD1; CSKMT; UQCC3; UBXN1; LRRN4CL; HNRNPUL2-BSCL2; HNRNPUL2; TMEM179B; TMEM223; NXF1; STX5; RNU2-2P; SLC3A2 | TMEM132A; FTH1; SLC15A3; FADS1; AHNAK; VPS37C; INCENP; RAB3IL1; LRRN4CL; EEF1G; TMEM138; ROM1; TUT1; DDB1; FADS2; CCDC86; MTA2; TMEM109 |
49 | chr11 | Differential | Strength Change | Basal | ACAT1; ATM; CUL5; NPAT; POGLUT3 | ATM; ACAT1; NPAT; CUL5 |
57 | chr14 | Differential | Strength Change | Basal | ZFYVE26; ZFP36L1 | Â |
65 | chr18 | Differential | Split | Basal | SPIRE1; SEH1L; CEP192; AFG3L2; CEP76 | CEP76; CEP192; SPIRE1; SEH1L |
72 | chr22 | Differential | Strength Change | Basal | MAPK1; UBE2L3; PPIL2; YPEL1; PPM1F | MAPK1; UBE2L3 |
73 | chr22 | Differential | Strength Change | Basal | JOSD1; GTPBP1; SUN2; CBX6; APOBEC3C; CBX7; RPL3; MIEF1; ATF4; RPS19BP1 | GTPBP1; RPL3; SUN2; ATF4; CBX6 |