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Fig. 8 | Genome Biology

Fig. 8

From: Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences

Fig. 8

Runtime comparison. Sequences from HG00733 (accession SRR7615963) were randomly sub-sampled to generate six samples of different read depths: 11, 16, 22, 33, 44, and 87X (original library). Runtimes were shown for running the aligners alone (minimap2 or LAST), the analysis tools alone (Straglr or tandem-genotypes), and the sum (minimap2 + Straglr, LAST + tandem-genotypes) using 32 threads/processors. tandem-genotypes time is taken from the longest completion time of any one of the 32 equal-size batches (22,445 loci) generated from hg38 simple repeats. LAST alignment times are the sum of running last-train and lastal

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