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Fig. 6 | Genome Biology

Fig. 6

From: Straglr: discovering and genotyping tandem repeat expansions using whole genome long-read sequences

Fig. 6

Heterozygous loci genotyping benchmark for HG00733. Comparison of allele sizes determined from the assembly against Straglr’s genotyping results for 418 annotated heterozygous loci (see the “Results” section for selection criteria). Each radial line in the circular plot represents a locus. The chromosome on which the locus lies is shown as a number and arc along the circumference. The black segment on each radial line represents the span in size (bp) between the two alleles determined from the assembly. Colored circle markers on each radial line indicate allele sizes according to Straglr’s genotype. One or two markers may be present on each radius because Straglr may only report a single allele that is found heterozygous by the assembly. Green markers represent agreement between the allele sizes (see the “Methods” section for matching criteria), red indicates disagreement

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