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Table 3 Variants ordered by the position in the marker genome for three samples (HG00096, HG00101, HG00103). Each variant has the list of samples that contain the variant

From: VariantStore: an index for large-scale genomic variant search

Reference sequence CAATTTGCTGATCT
Position Reference seq. Alternative seq. HG00096 HG00101 HG00103 Variant type
2 A G 0 1 1 SUBSTITUTION
2 AATT A 1 0 0 DELETION
6 T TACG 0 0 1 INSERTION