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Fig. 3 | Genome Biology

Fig. 3

From: Haploflow: strain-resolved de novo assembly of viral genomes

Fig. 3

Phylogenetic relationships of reconstructed strain genomes inferred with Raxml [40, 41], including closely related (ANI greater than 99.99%, determined with MASH [42]) strains from GISAID [43]. Strains from the same sample are indicated by color, and “major” and “minor,” based on their inferred abundances. Evolutionary events, including mutations, and indels are shown on edges

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