Fig. 3From: Haploflow: strain-resolved de novo assembly of viral genomesPhylogenetic relationships of reconstructed strain genomes inferred with Raxml [40, 41], including closely related (ANI greater than 99.99%, determined with MASH [42]) strains from GISAID [43]. Strains from the same sample are indicated by color, and “major” and “minor,” based on their inferred abundances. Evolutionary events, including mutations, and indels are shown on edgesBack to article page