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Fig. 2 | Genome Biology

Fig. 2

From: Evolution of mouse circadian enhancers from transposable elements

Fig. 2

RSINE1 elements are overrepresented in RABS. A All TEs detected in BMAL1 ChIP-seq peaks, plotted by the number of elements observed compared to the ratio of observed to expected occurrences for that particular TE. Expected values were calculated by bootstrapping 1000 times (see the “Methods” section). The dashed line denotes our cutoff of > 50 elements observed imposed to filter false positives. B Ratio of observed to expected occurrences, as in A, for individual members of the B4 family and for the entire B4 family, in sets of RABS associated with each CR. C As in B, but enrichment of TEs in high confidence CLOCK:BMAL1 binding sites categorized by their nascent transcriptional output. All p-values were obtained using a two-sided binomial test

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