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Table 1 Assembly and annotation metrics of the 18 B. rapa genomes

From: Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

Accession

Assembly size (Mb)

Complete BUSCOs (%)

Repeat sequences

Annotated loci

Syntenic genes*

Length (Mb)

Percent (%)

Count

Percent (%)

BRO

378.31

97.3

183

48.36

46,034

39,689

82.73

CCA

341.62

98.0

153

44.75

46,875

41,599

87.49

CCB

378.47

98.1

187

49.49

44,207

40,379

84.22

Chiifu

353.14

98.0

164

46.52

46,878

46,878

100.00

CXA

378.75

97.8

183

48.27

45,145

39,891

83.30

CXB

348.22

97.9

157

45.12

45,911

40,540

84.27

MIZ

386.27

97.6

186

48.20

45,350

40,083

82.82

OIA

434.64

97.4

221

50.93

45,776

39,394

82.53

OIB

354.41

97.5

164

46.39

46,553

39,672

82.29

OIC

337.46

94.7

154

45.73

45,389

38,606

81.46

PCA

367.56

97.3

177

48.20

46,550

40,848

85.18

PCB

389.26

97.5

187

48.12

46,687

40,227

84.60

TCA

371.28

97.5

182

49.11

46,420

40,582

84.69

TUA

368.70

97.5

174

47.12

47,557

40,287

84.18

TUE

384.72

96.8

193

50.28

45,845

39,927

84.01

TBA

422.86

97.5

217

51.32

45,346

39,105

81.59

WTC

466.50

97.5

254

54.37

47,602

39,225

82.51

Z1

401.93

97.7

179

44.42

46,721

37,630

79.81

  1. *Syntenic genes in each accession were calculated using Chiifu as query genome