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Table 1 Assembly and annotation metrics of the 18 B. rapa genomes

From: Impacts of allopolyploidization and structural variation on intraspecific diversification in Brassica rapa

Accession Assembly size (Mb) Complete BUSCOs (%) Repeat sequences Annotated loci Syntenic genes*
Length (Mb) Percent (%) Count Percent (%)
BRO 378.31 97.3 183 48.36 46,034 39,689 82.73
CCA 341.62 98.0 153 44.75 46,875 41,599 87.49
CCB 378.47 98.1 187 49.49 44,207 40,379 84.22
Chiifu 353.14 98.0 164 46.52 46,878 46,878 100.00
CXA 378.75 97.8 183 48.27 45,145 39,891 83.30
CXB 348.22 97.9 157 45.12 45,911 40,540 84.27
MIZ 386.27 97.6 186 48.20 45,350 40,083 82.82
OIA 434.64 97.4 221 50.93 45,776 39,394 82.53
OIB 354.41 97.5 164 46.39 46,553 39,672 82.29
OIC 337.46 94.7 154 45.73 45,389 38,606 81.46
PCA 367.56 97.3 177 48.20 46,550 40,848 85.18
PCB 389.26 97.5 187 48.12 46,687 40,227 84.60
TCA 371.28 97.5 182 49.11 46,420 40,582 84.69
TUA 368.70 97.5 174 47.12 47,557 40,287 84.18
TUE 384.72 96.8 193 50.28 45,845 39,927 84.01
TBA 422.86 97.5 217 51.32 45,346 39,105 81.59
WTC 466.50 97.5 254 54.37 47,602 39,225 82.51
Z1 401.93 97.7 179 44.42 46,721 37,630 79.81
  1. *Syntenic genes in each accession were calculated using Chiifu as query genome