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Table 2 Disentanglement metrics for two splatter-simulated single-cell RNA-seq datasets with four ground truth variables

From: MichiGAN: sampling from disentangled representations of single-cell data using generative adversarial networks

   Spearman correlation gap ↑ FactorVAE metric ↑ MIG ↑
Linear step PCA 0.57 0.36 0.56
  VAE 0.37 0.44 0.39
  β-TCVAE 0.65 0.33 0.72
Non-linear step PCA 0.60 0.36 0.58
  VAE 0.4 0.38 0.38
  β-TCVAE 0.55 0.34 0.73
  1. The dimensionality of the latent space was 4 for all three approaches
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Genome Biology

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