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Fig. 4 | Genome Biology

Fig. 4

From: Genetic and environmental modulation of transposition shapes the evolutionary potential of Arabidopsis thaliana

Fig. 4

TE mobilization within or near genes predominantly generates deleterious mutations. a Fraction of low- and high-frequency TE presence variants overlapping genic annotations (exons, introns, 5′ or 3′ UTRs) or located near genes (upstream/downstream within 250 bp, or within 2 kb) or intergenic (> 2 kb away from nearest gene) compared to the genomic proportion of each category. b Insertion frequencies across genomic categories for TE families with ≥ 50 TIPs. Rows are standardized and clustered based on correlation distance. c Distribution of low- and high-frequency TE presence variants in exons, introns, and promoter regions (<− 250 bp) for each TE superfamily. d GO enrichments of LF presence variants within genes. e Excess of extreme expression log ratios between carriers (C) and non-carriers (NC) by insertion category at low- and high-frequency (negative = DE- at bottom, and positive = DE+ on top) compared to random sampling of carriers and non-carriers. f Median transcriptomic impact (C/NC expression ratio) by TE family by insertion category

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