Fig. 9
From: nPhase: an accurate and contiguous phasing method for polyploids
Contiguity and accuracy of nPhase results on virtual polyploids before and after automated cleaning. Each subgraph compares performance metrics for raw nPhase results with their automatically cleaned counterparts. Each point corresponds to a virtual genome of a given ploidy (n), coverage (X), and heterozygosity level. a We compare here the number of haplotigs per haplotype in all these conditions. We find a significant reduction in the number of haplotigs per haplotype for our cleaned results in all cases. b We compare here the accuracy (%) in all conditions. We find that the automated cleaning process has a small, negligible negative effect on accuracy in most cases, though not all