Fig. 6

Predicted haplotypes for the Brettanomyces bruxellensis strain. Each subgraph displays the predicted haplotigs for a different chromosome of this 0.7% heterozygosity level triploid, each predicted haplotig is on a different row on the Y axis, and the X axis displays the position along the chromosome. All predicted haplotigs are color coded randomly as the ground truth is not known. We observe that while the strain is a known triploid, nPhase did not exclusively predict three haplotypes per region. We also note that some regions such as the end of chromosome 2 or center of chromosome 6 have a very low level of heterozygosity