Fig. 1
From: AFLAP: assembly-free linkage analysis pipeline using k-mers from genome sequencing data
Assembly-free linkage analysis pipeline (AFLAP). Blue rectangles summarize core steps of the pipeline and numbers correspond to script numbering found at https://github.com/kfletcher88/AFLAP [8]. Arrows indicate where one step outputs the input of the next step. Arrows labeled A indicate the path taken in genotyping and identifying markers from parental individuals. Arrows labeled B indicate the path taken to genotype progeny individuals. Red ovals and arrows are supplementary to AFLAP and not required to complete the pipeline. An example pedigree file is provided for the A. thaliana data (Additional file 2: Table S1)