Fig. 2

Diversity of candidate structured RNAs. a Structure diagram, showing the consensus features of HMP2_2419, a candidate structured RNA that associates with tRNA-ligases. b Structure diagrams of HMP2_6893 and HMP2_905, candidate structured RNAs that overlap in opposing orientations that are in the genomic neighborhood of uvrC. c Structure diagram of HMP2_13866, a candidate structured RNA found in Malassezia. d Structured diagram of HMP2_734, a candidate structured RNA that is likely a novel tmRNA. The legend in d applies to all structure diagrams in this manuscript to indicate nucleotide presence, nucleotide identity, and covariation. Yellow shading indicates the start and stop site of the small gene within the tmRNA