Skip to main content
Fig. 3 | Genome Biology

Fig. 3

From: gapseq: informed prediction of bacterial metabolic pathways and reconstruction of accurate metabolic models

Fig. 3

Results of the fermentation product test of 24 bacterial organisms under anaerobic growth with models generated using gapseq, CarveMe, and ModelSEED. Point sizes indicate the predicted production of a fermentation product metabolite (columns) by the corresponding organism (row). Predictions (black) are based on Minimise-Total-Flux (MTF) flux balance analyses. Grey circles indicate the upper production limit obtained from Flux-Variability-Analysis (FVA). Metabolite-organism-combinations highlighted in green denote known fermentation products, which have been reported in literature based on experimental measures of the metabolite in anaerobic cultures

Back to article page

Genome Biology

ISSN: 1474-760X

Contact us