Table 2 Summary of approaches that address sources of uncertainty in environment specification. Highlighted in bold are key approaches related to probabilistic or ensemble-based methods
From: Addressing uncertainty in genome-scale metabolic model reconstruction and analysis
Approach | Sources of uncertainty | References |
|---|---|---|
Media databases | Inconsistent media definition | |
Experimental determination | Undefined environment composition | |
Phenotype phase plane | Variable environment composition | |
Ensemble sampling | Variable environment composition | |
Probabilistic sampling | Variable environment composition | [80] |
Reverse ecology | Undefined environment composition |