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Fig. 2 | Genome Biology

Fig. 2

From: FlsnRNA-seq: protoplasting-free full-length single-nucleus RNA profiling in plants

Fig. 2

Dataset generated by flsnRNA-seq is consistent with protoplast-based scRNA-seq. a Heatmap represents alignment score between the single-nucleus data and single-cell datasets generated from 10x Genomics platform. Alignment score is calculated by Scanorama [30]. Higher alignment score indicates higher similarity between a pair of datasets. b Pairwise integration of two single cell/nucleus datasets. The batch effect is removed by Scanorama. The expression matrix is downsampled to the same dimension as the single-nucleus data

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