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Table 4 Comparison of the numbers of errors in coding and non-coding regions before and after running Homopolish using the Zymo R9.4 dataset

From: Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

 

Coding regions errors

Non-coding regions errors

 

Before

After

Correction ratio

Before

After

Correction ratio

B. subtilis

446

80

82.06%

232

165

28.88%

E. faecalis

244

21

91.39%

176

34

80.68%

S. aureus

306

38

87.58%

100

17

83.00%

L. monocytogenes

160

19

88.13%

80

26

67.50%

P. aeruginosa

666

30

95.50%

279

8

97.13%

S. enterica

469

66

85.93%

118

13

88.98%

E. coli

544

163

70.04%

201

141

29.85%

  1. DFAST was used for the annotation of coding/non-coding regions in each genome