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Table 3 Q scores and numbers of mismatch, insertion, and deletion errors on Lambda phage and Saccharomyces cerevisiae

From: Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

Species

Methods

Avg. Q score

Median Q score

Mismatches

Insertions

Deletions

Lambda phage

Flye

24.17

24.17

7

177

2

 

Racon 4x + Medaka

36.44

36.44

4

5

2

 

Racon 4x + Hompolish

39.07

39.07

4

1

1

 

Racon 4x + Medaka + Homopolish

38.4

38.4

4

2

1

 

MarginPolish + HELEN

19.95

19.95

123

16

144

 

MarginPolish + Homopolish

37.31

37.31

6

2

1

 

MarginPolish + HELEN + Homopolish

21.99

21.99

169

10

18

S. cerevisiae

Flye

20.43

20.52

2715

75290

8459

 

Racon 4x + Medaka

22.89

23.55

2345

44979

3232

 

Racon 4x + Hompolish

27.84

30.64

4683

10556

1042

 

Racon 4x + Medaka + Homopolish

28.72

32.58

2374

9917

928

 

MarginPolish + HELEN

20.38

20.71

3123

45701

26865

 

MarginPolish + Homopolish

28.7

32.68

2007

9547

1817

 

MarginPolish + HELEN + Homopolish

24.86

26.09

3449

8997

15572