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Table 3 Q scores and numbers of mismatch, insertion, and deletion errors on Lambda phage and Saccharomyces cerevisiae

From: Homopolish: a method for the removal of systematic errors in nanopore sequencing by homologous polishing

Species Methods Avg. Q score Median Q score Mismatches Insertions Deletions
Lambda phage Flye 24.17 24.17 7 177 2
  Racon 4x + Medaka 36.44 36.44 4 5 2
  Racon 4x + Hompolish 39.07 39.07 4 1 1
  Racon 4x + Medaka + Homopolish 38.4 38.4 4 2 1
  MarginPolish + HELEN 19.95 19.95 123 16 144
  MarginPolish + Homopolish 37.31 37.31 6 2 1
  MarginPolish + HELEN + Homopolish 21.99 21.99 169 10 18
S. cerevisiae Flye 20.43 20.52 2715 75290 8459
  Racon 4x + Medaka 22.89 23.55 2345 44979 3232
  Racon 4x + Hompolish 27.84 30.64 4683 10556 1042
  Racon 4x + Medaka + Homopolish 28.72 32.58 2374 9917 928
  MarginPolish + HELEN 20.38 20.71 3123 45701 26865
  MarginPolish + Homopolish 28.7 32.68 2007 9547 1817
  MarginPolish + HELEN + Homopolish 24.86 26.09 3449 8997 15572