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Fig. 2 | Genome Biology

Fig. 2

From: iMAP: integration of multiple single-cell datasets by adversarial paired transfer networks

Fig. 2

Benchmarks of batch effect removal methods. a Visualizations of iMAP batch effect removal results on the “DC_rm” dataset. Three kinds of colors are used to illustrate the cell type, batch, and evaluation information. b iLISI values for two cell types and cLISI values obtained by different methods on the “DC_rm” datasets. The dashed lines (the same below) represent the best theoretical LISI values. c Quantitative assessments of different batch effect removal methods on the “DC_rm” dataset. Two indices—proportion of positive cells (surrounded by cells with the same cell type) and proportion of true positive cells (surrounded by appropriate fractions of cells from different batches)—are adopted. d Visualizations of iMAP batch effect removal results on the “cell_lines” dataset. e Distributions of LISI values on the “cell_lines” dataset. f Quantitative assessments of different batch effect removal methods on the “cell_lines” dataset. See also Additional file 1: Fig. S2, 3, 4, 5

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