Fig. 4

Violin plots of predicted cell-type proportions (CTP) in cases and controls of each discovery cohort. ALS, amyotrophic lateral sclerosis; AD, Alzheimer’s disease; MCI, mild cognitive impairment; PD, Parkinson’s disease; RA, rheumatoid arthritis; SCZ, schizophrenia. The boxplot horizontal black line marks the median CTP value in that group. The red circle inside the boxplots marks the mean CTP value in that group. The lower and upper hinges correspond to the first and third quartiles (the 25th and 75th percentiles). The upper whisker extends from the hinge to the largest value no further than 1.5 * IQR from the hinge (where IQR is the inter-quartile range, or distance between the first and third quartiles). The lower whisker extends from the hinge to the smallest value at most 1.5 * IQR of the hinge