Skip to main content

Table 3 Median absolute deviation (MAD), mean absolute error (MAE), and root mean square error (RMSE) average for sorted real and sorted simulated library sizes, real and simulated bin means, and real and simulated non-zero cell proportions across all cell groups in the associated dataset. The reported values are the averages of these metrics ± the corresponding standard deviations based on 20 simulation runs. The unit of the values is 0.1%

From: simATAC: a single-cell ATAC-seq simulation framework

  Buenrostro2018 Cusanovich2018 PBMCs
  MAD MAE RMSE MAD MAE RMSE MAD MAE RMSE
Non-zero cell proportion 2.4 ±2.8 6.5 ±1.7 15.2 ±3.8 4.0 ±1.4 5.8 ±1.7 8.6 ±2.3 5.8 ±9.1 9.0 ±14 13.9 ±18
Bin mean 2.4 ±2.8 9.0 ±2.5 531.9 ±21 4.4 ±1.6 6.6 ±2.0 32.2 ±16 7.2 ±12 13.1 ±20 57.8 ±59
Library size 90 ±46 111.6 ±47 150.2 ±60 50.0 ±18 63.3 ±17 88.2 ±23 72.6 ±38 107.8 ±44 169 ±45