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Table 3 Median absolute deviation (MAD), mean absolute error (MAE), and root mean square error (RMSE) average for sorted real and sorted simulated library sizes, real and simulated bin means, and real and simulated non-zero cell proportions across all cell groups in the associated dataset. The reported values are the averages of these metrics ± the corresponding standard deviations based on 20 simulation runs. The unit of the values is 0.1%

From: simATAC: a single-cell ATAC-seq simulation framework

 

Buenrostro2018

Cusanovich2018

PBMCs

 

MAD

MAE

RMSE

MAD

MAE

RMSE

MAD

MAE

RMSE

Non-zero cell proportion

2.4 ±2.8

6.5 ±1.7

15.2 ±3.8

4.0 ±1.4

5.8 ±1.7

8.6 ±2.3

5.8 ±9.1

9.0 ±14

13.9 ±18

Bin mean

2.4 ±2.8

9.0 ±2.5

531.9 ±21

4.4 ±1.6

6.6 ±2.0

32.2 ±16

7.2 ±12

13.1 ±20

57.8 ±59

Library size

90 ±46

111.6 ±47

150.2 ±60

50.0 ±18

63.3 ±17

88.2 ±23

72.6 ±38

107.8 ±44

169 ±45