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Table 1 Input parameters to the simATAC simulation step

From: simATAC: a single-cell ATAC-seq simulation framework

Parameter Symbol Description
Library size mean μ1, μ2 The estimated means of two Gaussian modals of library size.
Library size standard deviation σ1, σ2 The estimated standard deviations of two Gaussian modals of
   library size.
Library size weight w The estimated weight parameter of the first Gaussian modal.
Non-zero cell proportion P The proportion of non-zero cells in real bin-by-cell matrix.
Polynomial coefficient β The estimated coefficients of polynomial model fitted to
   the relation between bin non-zero cell proportions and bin means.